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Citations, h-index, and other ways to define my research performance by somewhat ad hoc metrics
 
Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice. Supplemental Data, Article
Faith JJ, McNulty NP, Rey FE, Gordon JI. 
Science 2011.
 
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Article
Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. 
PNAS. 2011 Apr 12.
 
Creating and characterizing communities of human gut microbes in gnotobiotic mice. Article
Faith JJ*, Rey FE*, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, and Gordon JI. 
ISME Journal. 2010 Jul 22
 
Dissecting the in vivo metabolic potential of two human gut acetogens. Article
Rey FE*, Faith JJ*, Bain J, Muehlbauer MJ, Stevens RD, Newgard CD, and Gordon JI. 
Journal of Biological Chemistry. 2010 May 5
 
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins Article
Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, and Gordon JI 
PNAS. 2010 Apr 2
 
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Article
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, and Gordon JI. 
Science Translational Medicine. 2009 Nov 11
 
Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis. Article
Giannakis M*, Backhed HK*, Chen SL*, Faith JJ*, Wu M, Guruge JL, Engstrand L, and Gordon JI. 
Journal of Biological Chemistry. 2009 Sep 1
 
Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. Website, Article
Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, and Gardner TS. 
Nucleic Acids Research. Database Issue 2008
 
Lightweight Genome Viewer: portable software for browsing genomics data in its chromosomal context. Code, Article
Faith JJ, Olson AJ, Gardner TS, and Sachidanandam R. 
BMC Bioinformatics. Sept 2007
 
Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles. Article
Faith JJ*, Hayete B*, Thaden JT, Mogno I, Wierzbowski, Cottarel G, Kasif S, Collins JJ, and Gardner TS. 
PLoS Biology. Jan 2007
* authors contributed equally
 
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity. Abstract
Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, and Pollock DD. 
BMC Bioinformatics. Sept 2006
 
Evolution of base substitution gradients in primate mitochondrial genomes. Abstract
Raina SZ, Faith JJ, Seligmann H, Disotell T, Stewart C-B, and Pollock DD.
Genome Research. May 2005
 
Reverse-engineering transcription control networks. Article
Gardner TS and Faith JJ
Physics of Life Reviews. 2005
 
Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. Abstract
Faith JJ and Pollock DD
Genetics, Oct 2003; 165(2): 735-45.
 
Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Abstract
Phillips MS, Lawrence R, Sachidanandam R, Morris AP, Balding DB, Donaldson MA, Studebaker JF, Ankener WM, Alfisi SV, Kuo FS, Camisa AL, Pazorov V, Scott KE, Carey B, Faith J, Katari G, Bhatti HA, Cyr JM, Derohannessian V, Elosua C, Forman AM, Grecco NM, Hock CR, Kuebler JM, Lathrop JA, Mockler MA, Nachtman EP, Restine SL, Varde SA, Hozza MJ, Belfand CA, Broxholme J, Abecasis GR, Boyce-Jacino MT, and Cardon LR 
Nature Genetics 33: 382-7 (2003)
 



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