| Citations, h-index, and other ways to define my research performance by somewhat ad hoc metrics |
| |
| Predicting a Human Gut Microbiota's Response to Diet in Gnotobiotic Mice. |
Supplemental Data, Article |
| Faith JJ, McNulty NP, Rey FE, Gordon JI. | |
| Science 2011. |
| |
| Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. |
Article |
| Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. | |
| PNAS. 2011 Apr 12. |
| |
| Creating and characterizing communities of human gut microbes in gnotobiotic mice. |
Article |
| Faith JJ*, Rey FE*, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, and Gordon JI. | |
| ISME Journal. 2010 Jul 22 |
| |
| Dissecting the in vivo metabolic potential of two human gut acetogens. |
Article |
| Rey FE*, Faith JJ*, Bain J, Muehlbauer MJ, Stevens RD, Newgard CD, and Gordon JI. | |
| Journal of Biological Chemistry. 2010 May 5 |
| |
| Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins |
Article |
| Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, and Gordon JI | |
| PNAS. 2010 Apr 2 |
| |
| The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. |
Article |
| Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, and Gordon JI. | |
| Science Translational Medicine. 2009 Nov 11 |
| |
| Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis. |
Article |
| Giannakis M*, Backhed HK*, Chen SL*, Faith JJ*, Wu M, Guruge JL, Engstrand L, and Gordon JI. | |
| Journal of Biological Chemistry. 2009 Sep 1 |
| |
| Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata. |
Website, Article |
| Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, and Gardner TS. | |
| Nucleic Acids Research. Database Issue 2008 |
| |
| Lightweight Genome Viewer: portable software for browsing genomics data in its chromosomal context. |
Code, Article |
| Faith JJ, Olson AJ, Gardner TS, and Sachidanandam R. | |
| BMC Bioinformatics. Sept 2007 |
| |
| Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles. |
Article |
| Faith JJ*, Hayete B*, Thaden JT, Mogno I, Wierzbowski, Cottarel G, Kasif S, Collins JJ, and Gardner TS. | |
| PLoS Biology. Jan 2007 |
| * authors contributed equally |
| |
| EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity. |
Abstract |
| Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, and Pollock DD. | |
| BMC Bioinformatics. Sept 2006 |
| |
| Evolution of base substitution gradients in primate mitochondrial genomes. |
Abstract |
| Raina SZ, Faith JJ, Seligmann H, Disotell T, Stewart C-B, and Pollock DD. |
| Genome Research. May 2005 |
| |
| Reverse-engineering transcription control networks. |
Article |
| Gardner TS and Faith JJ |
| Physics of Life Reviews. 2005 |
| |
| Likelihood analysis of asymmetrical mutation bias gradients in
vertebrate mitochondrial genomes. |
Abstract |
| Faith JJ and Pollock DD |
| Genetics, Oct 2003; 165(2): 735-45. |
| |
| Chromosome-wide distribution of haplotype blocks and the role
of recombination hot spots. |
Abstract |
| Phillips MS, Lawrence R, Sachidanandam R, Morris AP, Balding DB, Donaldson MA, Studebaker JF, Ankener WM, Alfisi SV, Kuo FS, Camisa AL, Pazorov V, Scott KE, Carey B, Faith J, Katari G, Bhatti HA, Cyr JM, Derohannessian V, Elosua C, Forman AM, Grecco NM, Hock CR, Kuebler JM, Lathrop JA, Mockler MA, Nachtman EP, Restine SL, Varde SA, Hozza MJ, Belfand CA, Broxholme J, Abecasis GR, Boyce-Jacino MT, and Cardon LR | |
| Nature Genetics 33: 382-7 (2003) |
| |
|
