| Published | Article | Citations | Cites Per Year |
| 2007 | Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles. | 251 |
 |
| 2003 | Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots | 250 |
 |
| 2005 | Reverse-engineering transcription control networks. | 111 |
 |
| 2008 | Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata | 59 |
 |
| 2003 | Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. | 44 |
 |
| 2005 | Evolution of base substitution gradients in primate mitochondrial genomes. | 23 |
 |
| 2009 | The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice | 18 |
 |
| 2010 | Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins | 15 |
 |
| 2006 | EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity. | 4 |
 |
| 2007 | Lightweight Genome Viewer: portable software for browsing genomics data in its chromosomal context. | 3 |
 |
| 2010 | Dissecting the in vivo metabolic potential of two human gut acetogens | 3 |
 |
| 2009 | Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis | 1 |
|
| 2010 | Creating and characterizing communities of human gut microbes in gnotobiotic mice | 0 | |